CRAN/E | secsse

secsse

Several Examined and Concealed States-Dependent Speciation and Extinction

Installation

About

Simultaneously infers state-dependent diversification across two or more states of a single or multiple traits while accounting for the role of a possible concealed trait. See Herrera-Alsina et al. (2019) doi:10.1093/sysbio/syy057.

Citation secsse citation info
rsetienne.github.io/secsse/
github.com/rsetienne/secsse
Copyright see file COPYRIGHTS
System requirements C++17
Bug report File report

Key Metrics

Version 3.0.2
R ≥ 4.2.0
Published 2023-10-21 159 days ago
Needs compilation? yes
License GPL (≥ 3)
License File
CRAN checks secsse results

Downloads

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Last 7 days 83 0%
Last 30 days 313 -12%
Last 90 days 1.193 +27%
Last 365 days 3.959 +5%

Maintainer

Maintainer

Rampal S. Etienne

r.s.etienne@rug.nl

Authors

Leonel Herrera Alsina

aut

Paul van Els

aut

Thijs Janzen

ctb

Hanno Hildenbrandt

ctb

Pedro Santos Neves

ctb

Rampal S. Etienne

cre / aut

Material

NEWS
Reference manual
Package source

In Views

Phylogenetics

Vignettes

Using secsse with complete phylogenies (with extinction)
Plotting probabilities
Simulating with secsse
Starting secsse

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

secsse archive

Depends

R ≥ 4.2.0

Imports

utils
DDD ≥ 5.0
ape
geiger
Rcpp ≥ 1.0.10
RcppParallel
ggplot2
tibble
rlang

Suggests

diversitree
phytools
testthat
knitr
rmarkdown

LinkingTo

Rcpp
RcppParallel
BH ≥ 1.81.0-1