CRAN/E | sccca

sccca

Single-Cell Correlation Based Cell Type Annotation

Installation

About

Performing cell type annotation based on cell markers from a unified database. The approach utilizes correlation-based approach combined with association analysis using Fisher-exact and phyper statistical tests (Upton, Graham JG. (1992) doi:10.2307/2982890).

Key Metrics

Version 0.1.1
Published 2024-03-13 50 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks sccca results

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Maintainer

Maintainer

Mohamed Soudy

Mohmedsoudy2009@gmail.com

Authors

Mohamed Soudy

aut / cre

Sophie LE BARS

aut

Enrico Glaab

aut

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

sccca archive

Imports

Seurat
dplyr
plyr
scales
HGNChelper
openxlsx