CRAN/E | scPloidy

scPloidy

Infer Ploidy of Single Cells

Installation

About

Compute ploidy of single cells (or nuclei) based on single-cell (or single-nucleus) ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) data .

Bug report File report

Key Metrics

Version 0.6.2
R ≥ 3.5.0
Published 2024-04-28 5 days ago
Needs compilation? no
License MIT
License File
CRAN checks scPloidy results

Downloads

Yesterday 55 +450%
Last 7 days 145 +99%
Last 30 days 286 +53%
Last 90 days 613 -7%
Last 365 days 2.350 +74%

Maintainer

Maintainer

Fumihiko Takeuchi

fumihiko@takeuchi.name

Authors

Fumihiko Takeuchi

aut / cre

Material

README
Reference manual
Package source

Vignettes

CNV
intro

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

scPloidy archive

Depends

R ≥ 3.5.0

Imports

dplyr
GenomicRanges
magrittr
MASS
matrixStats
mixtools
nimble
rlang
Rsamtools
tibble
tidyr
utils

Suggests

gplots
IRanges
knitr
readr
rmarkdown
testthat ≥ 3.0.0