CRAN/E | ribd

ribd

Pedigree-based Relatedness Coefficients

Installation

About

Recursive algorithms for computing various relatedness coefficients, including pairwise kinship, kappa and identity coefficients. Both autosomal and X-linked coefficients are computed. Founders are allowed to be inbred, which enables construction of any given kappa coefficients, as described in Vigeland (2020) doi:10.1007/s00285-020-01505-x. In addition to the standard coefficients, 'ribd' also computes a range of lesser-known coefficients, including generalised kinship coefficients, multi-person coefficients and two-locus coefficients (Vigeland, 2023, doi:10.1093/g3journal/jkac326). Many features of 'ribd' are available through the online app 'QuickPed' at ; see Vigeland (2022) doi:10.1186/s12859-022-04759-y.

Citation ribd citation info
github.com/magnusdv/ribd
magnusdv.github.io/pedsuite/

Key Metrics

Version 1.7.0
R ≥ 4.1.0
Published 2024-03-26 24 days ago
Needs compilation? no
License GPL-3
CRAN checks ribd results
Language en-GB

Downloads

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Last 7 days 114 -12%
Last 30 days 620 +72%
Last 90 days 1.530 +35%
Last 365 days 5.265 +5%

Maintainer

Maintainer

Magnus Dehli Vigeland

m.d.vigeland@medisin.uio.no

Authors

Magnus Dehli Vigeland

aut / cre

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

ribd archive

Depends

pedtools ≥ 2.2.0
R ≥ 4.1.0

Imports

glue
kinship2
slam

Suggests

ggplot2
ggrepel
plotly
spelling
testthat

Reverse Depends

pedsuite

Reverse Imports

dvir
forrel
ibdsim2
KinMixLite
numberofalleles
pedbuildr
verbalisr