CRAN/E | rPBK

rPBK

Inference and Prediction of Generic Physiologically-Based Kinetic Models

Installation

About

Fit and simulate any kind of physiologically-based kinetic ('PBK') models whatever the number of compartments. Moreover, it allows to account for any link between pairs of compartments, as well as any link of each of the compartments with the external medium. Such generic PBK models have today applications in pharmacology (PBPK models) to describe drug effects, in toxicology and ecotoxicology (PBTK models) to describe chemical substance effects. In case of exposure to a parent compound (drug or chemical) the 'rPBK' package allows to consider metabolites, whatever their number and their phase (I, II, ...). Last but not least, package 'rPBK' can also be used for dynamic flux balance analysis (dFBA) to deal with metabolic networks. See also Charles et al. (2022) doi:10.1101/2022.04.29.490045.

gitlab.in2p3.fr/mosaic-software/rPBK/
System requirements GNU make
Bug report File report

Key Metrics

Version 0.2.4
R ≥ 3.4.0
Published 2024-02-26 63 days ago
Needs compilation? yes
License MIT
License File
CRAN checks rPBK results

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Maintainer

Maintainer

Virgile Baudrot

virgile.baudrot@qonfluens.com

Authors

Virgile Baudrot

aut / cre

Sandrine Charles

aut

Christelle Lopes

aut

Ophélia Gestin

ctb

Dominique Lamonica

ctb

Aurélie Siberchicot

ctb

Material

README
Reference manual
Package source

Vignettes

Examples

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

rPBK archive

Depends

R ≥ 3.4.0

Imports

ggplot2
methods
Rcpp ≥ 0.12.0
rstan ≥ 2.26.0
rstantools

Suggests

knitr
loo
rmarkdown
testthat

LinkingTo

BH ≥ 1.66.0
Rcpp ≥ 0.12.0
RcppEigen ≥ 0.3.3.3.0
RcppParallel ≥ 5.0.1
rstan ≥ 2.26.0
StanHeaders ≥2.26.0