CRAN/E | rMVP

rMVP

Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS Tool

Installation

About

A memory-efficient, visualize-enhanced, parallel-accelerated Genome-Wide Association Study (GWAS) tool. It can (1) effectively process large data, (2) rapidly evaluate population structure, (3) efficiently estimate variance components several algorithms, (4) implement parallel-accelerated association tests of markers three methods, (5) globally efficient design on GWAS process computing, (6) enhance visualization of related information. 'rMVP' contains three models GLM (Alkes Price (2006) doi:10.1038/ng1847), MLM (Jianming Yu (2006) doi:10.1038/ng1702) and FarmCPU (Xiaolei Liu (2016) doi:10.1371/journal.pgen.1005767); variance components estimation methods EMMAX (Hyunmin Kang (2008) doi:10.1534/genetics.107.080101;), FaSTLMM (method: Christoph Lippert (2011) doi:10.1038/nmeth.1681, R implementation from 'GAPIT2': You Tang and Xiaolei Liu (2016) doi:10.1371/journal.pone.0107684 and 'SUPER': Qishan Wang and Feng Tian (2014) doi:10.1371/journal.pone.0107684), and HE regression (Xiang Zhou (2017) doi:10.1214/17-AOAS1052).

github.com/xiaolei-lab/rMVP
Bug report File report

Key Metrics

Version 1.0.8
R ≥ 3.3
Published 2023-11-27 156 days ago
Needs compilation? yes
License Apache License 2.0
CRAN checks rMVP results

Downloads

Yesterday 15 -46%
Last 7 days 155 -20%
Last 30 days 602 -17%
Last 90 days 1.903 -32%
Last 365 days 8.298 +43%

Maintainer

Maintainer

Xiaolei Liu

xll198708@gmail.com

Authors

Lilin Yin

aut

Haohao Zhang

aut

Zhenshuang Tang

aut

Jingya Xu

aut

Dong Yin

aut

Zhiwu Zhang

aut

Xiaohui Yuan

aut

Mengjin Zhu

aut

Shuhong Zhao

aut

Xinyun Li

aut

Qishan Wang

ctb

Feng Tian

ctb

Hyunmin Kang

ctb

Xiang Zhou

ctb

Xiaolei Liu

cre / aut / cph

Material

ChangeLog
Reference manual
Package source

In Views

Agriculture

macOS

r-release

arm64

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arm64

r-release

x86_64

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x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

rMVP archive

Depends

R ≥ 3.3

Imports

utils
stats
methods
graphics
grDevices
MASS
bigmemory

Suggests

knitr
testthat
rmarkdown

LinkingTo

Rcpp
RcppArmadillo
RcppEigen
RcppProgress
BH
bigmemory