CRAN/E | qtlpoly

qtlpoly

Random-Effect Multiple QTL Mapping in Autopolyploids

Installation

About

Performs random-effect multiple interval mapping (REMIM) in full-sib families of autopolyploid species based on restricted maximum likelihood (REML) estimation and score statistics, as described in Pereira et al. (2020) doi:10.1534/genetics.120.303080.

Citation qtlpoly citation info
gabrielgesteira.github.io/QTLpoly/
Bug report File report

Key Metrics

Version 0.2.3
R ≥ 4.0
Published 2022-01-12 837 days ago
Needs compilation? yes
License GPL-3
CRAN checks qtlpoly results

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Maintainer

Maintainer

Gabriel de Siqueira Gesteira

gdesiqu@ncsu.edu

Authors

Guilherme da Silva Pereira

aut

Marcelo Mollinari

ctb

Gabriel de Siqueira Gesteira

ctb / cre

Zhao-Bang Zeng

ctb

Long Qu

ctb

(R code for variance component tests using score statistics in R/varComp.R)

Giovanny Covarrubias-Pazaran

ctb

(C code for fitting mixed models with REML estimation in src/MNR.cpp)

Material

README
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

qtlpoly archive

Depends

R ≥ 4.0

Imports

ggplot2 ≥ 3.1
abind ≥ 1.4
MASS ≥ 7.3
gtools ≥3.9.2
CompQuadForm
Matrix
RLRsim
mvtnorm
nlme
quadprog
parallel
stats
methods
Rcpp ≥ 0.12.19

Suggests

mappoly
rmarkdown
devtools
knitr

LinkingTo

Rcpp
RcppArmadillo
RcppProgress