CRAN/E | qtl2pleio

qtl2pleio

Testing Pleiotropy in Multiparental Populations

Installation

About

We implement an adaptation of Jiang & Zeng's (1995) likelihood ratio test for testing the null hypothesis of pleiotropy against the alternative hypothesis, two separate quantitative trait loci. The test differs from that in Jiang & Zeng (1995) and that in Tian et al. (2016) doi:10.1534/genetics.115.183624 in that our test accommodates multiparental populations.

Citation qtl2pleio citation info
github.com/fboehm/qtl2pleio
Bug report File report

Key Metrics

Version 1.4.3
R ≥ 3.2
Published 2020-12-02 1240 days ago
Needs compilation? yes
License MIT
License File
CRAN checks qtl2pleio results
Language en-US

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Maintainer

Maintainer

Frederick J Boehm

frederick.boehm@gmail.com

Authors

Frederick J Boehm

aut / cre

Material

README
NEWS
Reference manual
Package source

Vignettes

Using HTCondor for bootstrap analysis

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

qtl2pleio archive

Depends

R ≥ 3.2

Imports

dplyr
gemma2
ggplot2
magrittr
MASS
Rcpp
rlang
tibble
parallel

Suggests

covr
mvtnorm
knitr
rmarkdown
testthat
broman
devtools
qtl2
parallelly

LinkingTo

Rcpp
RcppEigen