CRAN/E | qtl2fst

qtl2fst

Database Storage of Genotype Probabilities for QTL Mapping

Installation

About

Uses the 'fst' package to store genotype probabilities on disk for the 'qtl2' package. These genotype probabilities are a central data object for mapping quantitative trait loci (QTL), but they can be quite large. The facilities in this package enable the genotype probabilities to be stored on disk, leading to reduced memory usage with only a modest increase in computation time.

github.com/rqtl/qtl2fst

Key Metrics

Version 0.26
R ≥ 3.1.0
Published 2021-10-07 925 days ago
Needs compilation? no
License GPL-3
CRAN checks qtl2fst results

Downloads

Yesterday 13
Last 7 days 24 -29%
Last 30 days 184 -17%
Last 90 days 855 +28%
Last 365 days 2.921 +1%

Maintainer

Maintainer

Karl W Broman

broman@wisc.edu

Authors

Karl W Broman

aut / cre

Brian S Yandell

aut

Petr Simecek

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

qtl2fst user guide

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

qtl2fst archive

Depends

R ≥ 3.1.0

Imports

fst
qtl2 ≥ 0.24

Suggests

testthat
knitr
rmarkdown

Reverse Imports

qtl2pattern