CRAN/E | purgeR

purgeR

Inbreeding-Purging Estimation in Pedigreed Populations

Installation

About

Inbreeding-purging analysis of pedigreed populations, including the computation of the inbreeding coefficient, partial, ancestral and purged inbreeding coefficients, and measures of the opportunity of purging related to the individual reduction of inbreeding load. In addition, functions to calculate the effective population size and other parameters relevant to population genetics are included. See López-Cortegano E. (2021) doi:10.1093/bioinformatics/btab599.

Citation purgeR citation info
gitlab.com/elcortegano/purgeR/
Bug report File report

Key Metrics

Version 1.8.2
R ≥ 3.5.0
Published 2023-11-28 121 days ago
Needs compilation? yes
License GPL-2
CRAN checks purgeR results

Downloads

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Maintainer

Maintainer

Eugenio López-Cortegano

elcortegano@gmail.com

Authors

Eugenio López-Cortegano

aut / cre

Material

NEWS
Reference manual
Package source

Vignettes

Inbreeding and Purging Estimates
purgeR tutorial

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

purgeR archive

Depends

R ≥ 3.5.0

Imports

doSNOW ≥ 1.0.19
foreach ≥ 1.5.1
parallel
progress ≥1.2.2
Rcpp ≥ 1.0.5
RcppProgress ≥ 0.4.2

Suggests

caret ≥ 6.0-86
coda ≥ 0.19-4
dplyr ≥ 1.0.0
e1071 ≥ 1.7-4
ggplot2 ≥ 3.3.1
ggraph ≥ 2.1.0
glmnet ≥4.0-2
gtable ≥ 0.3.0
igraph ≥ 1.5.0.1
knitr ≥1.28
magrittr ≥ 1.5
pander ≥ 0.6.3
plyr ≥ 1.8.6
purrr ≥ 0.3.4
rmarkdown ≥ 2.2
scales ≥ 1.1.1
stringr ≥ 1.4.0
testthat ≥ 2.3.2
tibble ≥ 3.0.1
tidyr ≥ 1.1.0
tidyselect ≥ 1.1.0

LinkingTo

Rcpp
RcppProgress