CRAN/E | prozor

prozor

Minimal Protein Set Explaining Peptide Spectrum Matches

Installation

About

Determine minimal protein set explaining peptide spectrum matches. Utility functions for creating fasta amino acid databases with decoys and contaminants. Peptide false discovery rate estimation for target decoy search results on psm, precursor, peptide and protein level. Computing dynamic swath window sizes based on MS1 or MS2 signal distributions.

github.com/protviz/prozor
Bug report File report

Key Metrics

Version 0.3.1
R ≥ 3.1.0
Published 2021-12-07 874 days ago
Needs compilation? no
License GPL-3
CRAN checks prozor results

Downloads

Yesterday 8 0%
Last 7 days 71 +25%
Last 30 days 213 -5%
Last 90 days 653 -24%
Last 365 days 2.786 -23%

Maintainer

Maintainer

Witold Wolski

wewolski@gmail.com

Authors

Witold Wolski

aut / cre

Material

README
NEWS
Reference manual
Package source

Vignettes

Creating Target Decoy Databases
Peptide Annotation and Protein Inference
Target Decoy FDR
Computing Dynamic SWATH Windows

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

prozor archive

Depends

R ≥ 3.1.0

Imports

AhoCorasickTrie
docopt
Matrix
methods
purrr
readr
rlang
seqinr
stringr
dplyr

Suggests

knitr
rmarkdown