CRAN/E | protti

protti

Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools

Installation

About

Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) doi:10.1038/nbt.2999) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.

Citation protti citation info
github.com/jpquast/protti
jpquast.github.io/protti/
Bug report File report

Key Metrics

Version 0.7.0
R ≥ 4.0
Published 2024-02-17 40 days ago
Needs compilation? no
License MIT
License File
CRAN checks protti results

Downloads

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Maintainer

Maintainer

Jan-Philipp Quast

quast@imsb.biol.ethz.ch

Authors

Jan-Philipp Quast

aut / cre

Dina Schuster

aut

ETH Zurich

cph / fnd

Material

README
NEWS
Reference manual
Package source

In Views

Omics

Vignettes

Dose-Response Data Analysis Workflow
Single Dose Treatment Data Analysis Workflow
Input Preparation Workflow
Protein Structure Analysis Workflow
Qualtiy Control (QC) workflow

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

protti archive

Depends

R ≥ 4.0

Imports

rlang
dplyr
stringr
magrittr
data.table
janitor
progress
purrr
tidyr
ggplot2
forcats
tibble
plotly
ggrepel
utils
grDevices
curl
readr
lifecycle
httr
methods
R.utils
stats

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