protr

Generating Various Numerical Representation Schemes for Protein Sequences

Installation

About

Comprehensive toolkit for generating various numerical features of protein sequences described in Xiao et al. (2015) doi:10.1093/bioinformatics/btv042. For full functionality, the software 'ncbi-blast+' is needed, see for more information.

Citation	protr citation info
nanx.me/protr/
github.com/nanxstats/protr
protr.org
System requirements	ncbi-blast+ (see <https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html>)
Bug report	File report

Key Metrics

Version	1.7-1
R	≥ 3.0.2
Published	2024-04-20 8 days ago
Needs compilation?	no
License	BSD_3_clause
License	File
CRAN checks	protr results

Downloads

Yesterday	15 -75%
Last 7 days	338 +111%
Last 30 days	719 -6%
Last 90 days	2.134 -8%
Last 365 days	8.037 -25%

Maintainer

Nan Xiao

me@nanx.me

Authors

Nan Xiao	aut / cre
Qing-Song Xu	aut
Dong-Sheng Cao	aut
Sebastian Mueller	ctb (Alva Genomics)

Material

README
NEWS
Reference manual
Package source

Vignettes

protr: R package for generating various numerical representation schemes of protein sequences

macOS

r-prerel	arm64
r-release	arm64
r-oldrel	arm64
r-prerel	x86_64
r-release	x86_64

Windows

r-prerel	x86_64
r-release	x86_64
r-oldrel	x86_64

Old Sources

protr archive

Depends

≥ 3.0.2

Suggests

knitr
rmarkdown
Biostrings
GOSemSim
foreach
doParallel
org.Hs.eg.db

Reverse Imports

HPiP
PredCRG
surfaltr