CRAN/E | popkin

popkin

Estimate Kinship and FST under Arbitrary Population Structure

Installation

About

Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2021) doi:10.1371/journal.pgen.1009241.

Citation popkin citation info
github.com/StoreyLab/popkin/
Bug report File report

Key Metrics

Version 1.3.23
R ≥ 3.5.0
Published 2023-01-07 446 days ago
Needs compilation? no
License GPL-3
CRAN checks popkin results

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Maintainer

Maintainer

Alejandro Ochoa

alejandro.ochoa@duke.edu

Authors

Alejandro Ochoa

aut / cre

John D. Storey

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

Estimate Kinship and FST under Arbitrary Population Structure with 'popkin'

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

popkin archive

Depends

R ≥ 3.5.0

Imports

RColorBrewer
graphics
grDevices
ape

Suggests

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