CRAN/E | phyloregion

phyloregion

Biogeographic Regionalization and Macroecology

Installation

About

Computational infrastructure for biogeography, community ecology, and biodiversity conservation (Daru et al. 2020) doi:10.1111/2041-210X.13478. It is based on the methods described in Daru et al. (2020) doi:10.1038/s41467-020-15921-6. The original conceptual work is described in Daru et al. (2017) doi:10.1016/j.tree.2017.08.013 on patterns and processes of biogeographical regionalization. Additionally, the package contains fast and efficient functions to compute more standard conservation measures such as phylogenetic diversity, phylogenetic endemism, evolutionary distinctiveness and global endangerment, as well as compositional turnover (e.g., beta diversity).

Citation phyloregion citation info
github.com/darunabas/phyloregion
phyloregion.com/index.html
Bug report File report

Key Metrics

Version 1.0.8
R ≥ 4.0.0
Published 2023-08-15 253 days ago
Needs compilation? no
License AGPL-3
CRAN checks phyloregion results

Downloads

Yesterday 22 0%
Last 7 days 71 -28%
Last 30 days 385 -22%
Last 90 days 1.339 -10%
Last 365 days 5.360 +12%

Maintainer

Maintainer

Barnabas H. Daru

darunabas@gmail.com

Authors

Barnabas H. Daru

aut / cre / cph

Piyal Karunarathne

aut

Klaus Schliep

aut

Xiaobei Zhao

ctb

Albin Sandelin

ctb

Luciano Pataro

ctb

Material

README
NEWS
Reference manual
Package source

In Views

Phylogenetics

Vignettes

Benchmarking phyloregion
Fast Evolutionary Distinctiveness
An introduction to the phyloregion package

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

phyloregion archive

Depends

R ≥ 4.0.0

Imports

ape
phangorn
Matrix
betapart
parallel
methods
colorspace
igraph
clustMixType
maptpx
terra
vegan
predicts
smoothr

Suggests

tinytest
knitr
rmarkdown
mapproj
survival
rJava
phyloseq
V8

Reverse Imports

canaper

Reverse Suggests

Rarefy