CRAN/E | pedprobr

pedprobr

Probability Computations on Pedigrees

Installation

About

An implementation of the Elston-Stewart algorithm for calculating pedigree likelihoods given genetic marker data (Elston and Stewart (1971) doi:10.1159/000152448). The standard algorithm is extended to allow inbred founders. 'pedprobr' is part of the 'ped suite', a collection of packages for pedigree analysis in R. In particular, 'pedprobr' depends on 'pedtools' for pedigree manipulations and 'pedmut' for mutation modelling. For more information, see 'Pedigree Analysis in R' (Vigeland, 2021, ISBN:9780128244302).

Citation pedprobr citation info
github.com/magnusdv/pedprobr
System requirements MERLIN (https://csg.sph.umich.edu/abecasis/merlin/) for calculations involving multiple linked markers.
Bug report File report

Key Metrics

Version 0.9.3
R ≥ 4.1.0
Published 2024-04-02 16 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks pedprobr results
Language en-GB

Downloads

Yesterday 14
Last 7 days 106 -50%
Last 30 days 616 +11%
Last 90 days 1.771 +60%
Last 365 days 5.475 +19%

Maintainer

Maintainer

Magnus Dehli Vigeland

m.d.vigeland@medisin.uio.no

Authors

Magnus Dehli Vigeland

aut / cre

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

pedprobr archive

Depends

R ≥ 4.1.0
pedtools ≥ 1.1.0

Imports

pedmut ≥ 0.5.0

Suggests

testthat

Reverse Depends

pedsuite

Reverse Imports

dvir
forensIT
forrel
KLINK
paramlink2
pedbuildr
segregatr