CRAN/E | pcadapt

pcadapt

Fast Principal Component Analysis for Outlier Detection

Installation

About

Methods to detect genetic markers involved in biological adaptation. 'pcadapt' provides statistical tools for outlier detection based on Principal Component Analysis. Implements the method described in (Luu, 2016) doi:10.1111/1755-0998.12592 and later revised in (Privé, 2020) doi:10.1093/molbev/msaa053.

Citation pcadapt citation info
github.com/bcm-uga/pcadapt
Bug report File report

Key Metrics

Version 4.3.5
Published 2023-08-29 243 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks pcadapt results
Language en-US

Downloads

Yesterday 17 -32%
Last 7 days 201 +23%
Last 30 days 745 -16%
Last 90 days 2.684 -23%
Last 365 days 10.702 +38%

Maintainer

Maintainer

Florian Privé

florian.prive.21@gmail.com

Authors

Keurcien Luu

aut

Michael Blum

aut

Florian Privé

aut / cre

Eric Bazin

ctb

Nicolas Duforet-Frebourg

ctb

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

pcadapt archive

Imports

bigutilsr ≥ 0.3
data.table
ggplot2
magrittr
mmapcharr ≥ 0.3
Rcpp ≥ 0.12.8
RSpectra

Suggests

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LinkingTo

mmapcharr
Rcpp
rmio

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