CRAN/E | ordr

ordr

A 'tidyverse' Extension for Ordinations and Biplots

Installation

About

Ordination comprises several multivariate exploratory and explanatory techniques with theoretical foundations in geometric data analysis; see Podani (2000, ISBN:90-5782-067-6) for techniques and applications and Le Roux & Rouanet (2005) doi:10.1007/1-4020-2236-0 for foundations. Greenacre (2010, ISBN:978-84-923846) shows how the most established of these, including principal components analysis, correspondence analysis, multidimensional scaling, factor analysis, and discriminant analysis, rely on eigen-decompositions or singular value decompositions of pre-processed numeric matrix data. These decompositions give rise to a set of shared coordinates along which the row and column elements can be measured. The overlay of their scatterplots on these axes, introduced by Gabriel (1971) doi:10.1093/biomet/58.3.453, is called a biplot. 'ordr' provides inspection, extraction, manipulation, and visualization tools for several popular ordination classes supported by a set of recovery methods. It is inspired by and designed to integrate into 'tidyverse' workflows provided by Wickham et al (2019) doi:10.21105/joss.01686.

github.com/corybrunson/ordr
Bug report File report

Key Metrics

Version 0.1.1
R ≥ 3.3.0
Published 2022-10-20 555 days ago
Needs compilation? no
License GPL-3
CRAN checks ordr results

Downloads

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Maintainer

Maintainer

Jason Cory Brunson

cornelioid@gmail.com

Authors

Jason Cory Brunson

aut / cre

Emily Paul

ctb

Material

README
NEWS
Reference manual
Package source

Vignettes

CMDS of covariances
Ordination in the tidyverse

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

ordr archive

Depends

R ≥ 3.3.0
ggplot2

Imports

rlang
stringr
tidyselect
scales
generics
magrittr
tibble
tidyr
dplyr
purrr
labeling
ggrepel

Suggests

testthat
sessioninfo
gridExtra
MASS
mlpack
vegan
heplots
knitr
rmarkdown