CRAN/E | onemap

onemap

Construction of Genetic Maps in Experimental Crosses

Installation

About

Analysis of molecular marker data from model (backcrosses, F2 and recombinant inbred lines) and non-model systems (i. e. outcrossing species). For the later, it allows statistical analysis by simultaneously estimating linkage and linkage phases (genetic map construction) according to Wu et al. (2002) doi:10.1006/tpbi.2002.1577. All analysis are based on multipoint approaches using hidden Markov models.

Citation onemap citation info
github.com/augusto-garcia/onemap
Bug report File report

Key Metrics

Version 3.0.0
R ≥ 3.6.0
Published 2022-11-26 523 days ago
Needs compilation? yes
License GPL-3
CRAN checks onemap results

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Maintainer

Maintainer

Cristiane Taniguti

chtaniguti@tamu.edu

Authors

Gabriel Margarido

aut

Marcelo Mollinari

aut

Cristiane Taniguti

ctb / cre

Getulio Ferreira

ctb

Rodrigo Amadeu

ctb

Karl Broman

ctb

Katharine Preedy

ctb / cph

(MDS ordering algorithm)

Bastian Schiffthaler

ctb / cph

(HMM parallelization)

Augusto Garcia

aut / ctb

Material

Reference manual
Package source

In Views

Agriculture

Vignettes

Inbred Based Populations
Introduction to R
Outcrossing Populations
Overview

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

onemap archive

Depends

R ≥ 3.6.0

Imports

ggplot2 ≥ 2.2.1
plotly ≥ 4.7.1
reshape2 ≥ 1.4.1
Rcpp ≥ 0.10.5
graphics
methods
stats
utils
grDevices
smacof
princurve
parallel
dplyr
tidyr
htmlwidgets
ggpubr
RColorBrewer
dendextend
rebus
vcfR ≥ 1.6.0

Suggests

knitr ≥ 1.10
rmarkdown
testthat
stringr

LinkingTo

Rcpp ≥ 0.10.5