CRAN/E | dendextend

dendextend

Extending 'dendrogram' Functionality in R

Installation

About

Offers a set of functions for extending 'dendrogram' objects in R, letting you visualize and compare trees of 'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different 'dendrograms' to one another.

Citation dendextend citation info
talgalili.github.io/dendextend/
github.com/talgalili/dendextend/
cran.r-project.org/package=dendextend
www.r-statistics.com/tag/dendextend/
academic.oup.com/bioinformatics/article/31/22/3718/240978/dendextend-an-R-package-for-visualizing-adjusting
Bug report File report

Key Metrics

Version 1.17.1
R ≥ 3.0.0
Published 2023-03-25 392 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks dendextend results

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Maintainer

Maintainer

Tal Galili

tal.galili@gmail.com

Authors

Tal Galili

aut / cre / cph

(https://www.r-statistics.com)

Yoav Benjamini

ths

Gavin Simpson

ctb

Gregory Jefferis

aut / ctb

(imported code from his dendroextras package)

Marco Gallotta

ctb

(a.k.a: marcog)

Johan Renaudie

ctb

(https://github.com/plannapus)

The R Core Team

ctb

(Thanks for the Infastructure, and code in the examples)

Kurt Hornik

ctb

Uwe Ligges

ctb

Andrej-Nikolai Spiess

ctb

Steve Horvath

ctb

Peter Langfelder

ctb

skullkey

ctb

Mark Van Der Loo

ctb

(https://github.com/markvanderloo d3dendrogram)

Andrie de Vries

ctb

(ggdendro author)

Zuguang Gu

ctb

(circlize author)

Cath

ctb

(https://github.com/CathG)

John Ma

ctb

(https://github.com/JohnMCMa)

Krzysiek G

ctb

(https://github.com/storaged)

Manuela Hummel

ctb

(https://github.com/hummelma)

Chase Clark

ctb

(https://github.com/chasemc)

Lucas Graybuck

ctb

(https://github.com/hypercompetent)

jdetribol

ctb

(https://github.com/jdetribol)

Ben Ho

ctb

(https://github.com/SplitInf)

Samuel Perreault

ctb

(https://github.com/samperochkin)

Christian Hennig

ctb

(http://www.homepages.ucl.ac.uk/~ucakche/)

David Bradley

ctb

(https://github.com/DBradley27)

Houyun Huang

ctb

(https://github.com/houyunhuang)

Patrick Schupp

ctb

(https://github.com/pschupp)

Material

README
NEWS
ChangeLog
Reference manual
Package source

In Views

Cluster
Phylogenetics

Vignettes

Hierarchical cluster analysis on famous data sets - enhanced with the _dendextend_ package
Frequently asked questions
A quick introduction to dendextend (start here)
Introduction to dendextend

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

dendextend archive

Depends

R ≥ 3.0.0

Imports

utils
stats
datasets
magrittr ≥ 1.0.1
ggplot2
viridis

Suggests

knitr
rmarkdown
testthat
seriation
colorspace
ape
microbenchmark
gplots
heatmaply
dynamicTreeCut
pvclust
corrplot
DendSer
MASS
cluster
fpc
circlize ≥ 0.2.5
covr

Enhances

ggdendro
dendroextras
Hmisc
data.table
rpart
WGCNA
moduleColor
distory
phangorn
zoo

Reverse Depends

DeMixT
EnsCat
PdPDB
uclust

Reverse Imports

BasketballAnalyzeR
BiBitR
CALANGO
CellTrails
ChAMP
CHETAH
CINNA
Cluster.OBeu
conos
consensusDE
ecan
elaborator
factoextra
FlexDotPlot
GeneTonic
GlobalAncova
GOpro
GSEAmining
heatmaply
hfr
HGC
ILoReg
InterCellar
ldaPrototype
mappoly
Mercator
metaprotr
mFD
Momocs
multiClust
numbat
onemap
pagoo
PhosR
pRoloc
rabhit
rainette
rSAFE
SISIR
tidyHeatmap
tsibbletalk
ViSEAGO
visxhclust
YAPSA

Reverse Suggests

AntMAN
celltrackR
circlize
ClustAssess
cola
ComplexHeatmap
COTAN
DAPAR
DatabionicSwarm
dbscan
FCPS
HMP16SData
iconr
IncDTW
isocat
kmer
MAGeCKFlute
mdendro
packFinder
perfectphyloR
pergola
phylogram
plotly
ProjectionBasedClustering
protti
rare
sarp.snowprofile.alignment
scGPS
seriation
sharpshootR
sits
spiralize
TreeAndLeaf
variancePartition