CRAN/E | noisyr

noisyr

Noise Quantification in High Throughput Sequencing Output

Installation

About

Quantifies and removes technical noise from high-throughput sequencing data. Two approaches are used, one based on the count matrix, and one using the alignment BAM files directly. Contains several options for every step of the process, as well as tools to quality check and assess the stability of output.

github.com/Core-Bioinformatics/noisyR
Bug report File report

Key Metrics

Version 1.0.0
R ≥ 3.1.2
Published 2021-04-16 1113 days ago
Needs compilation? no
License GPL-2
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Maintainer

Maintainer

Ilias Moutsopoulos

im383@cam.ac.uk

Authors

Ilias Moutsopoulos

aut / cre

Irina Mohorianu

aut / ctb

Hajk-Georg Drost

ctb

Elze Lauzikaite

ctb

Material

README
Reference manual
Package source

Vignettes

noisyR count matrix approach workflow

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

noisyr archive

Depends

R ≥ 3.1.2

Imports

utils
grDevices
tibble
dplyr
magrittr
ggplot2
preprocessCore
IRanges
GenomicRanges
Rsamtools
philentropy
doParallel
foreach

Suggests

testthat
roxygen2
knitr
rmarkdown

Reverse Imports

bulkAnalyseR