CRAN/E | neutralitytestr

neutralitytestr

Test for a Neutral Evolutionary Model in Cancer Sequencing Data

Installation

About

Package takes frequencies of mutations as reported by high throughput sequencing data from cancer and fits a theoretical neutral model of tumour evolution. Package outputs summary statistics and contains code for plotting the data and model fits. See Williams et al 2016 doi:10.1038/ng.3489 and Williams et al 2017 doi:10.1101/096305 for further details of the method.

github.com/marcjwilliams1/neutralitytestr
Bug report File report

Key Metrics

Version 0.0.3
R ≥ 3.4
Published 2021-02-16 1162 days ago
Needs compilation? no
License MIT
License File
CRAN checks neutralitytestr results

Downloads

Yesterday 5 0%
Last 7 days 42 +83%
Last 30 days 165 -41%
Last 90 days 839 +30%
Last 365 days 2.483 -13%

Maintainer

Maintainer

Marc Williams

marcjwilliams1@gmail.com

Authors

Marc Williams

aut / cre

Material

README
NEWS
Reference manual
Package source

Vignettes

neutralitytestr: Testing a neutral evolutionary model on cancer sequencing data

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

neutralitytestr archive

Depends

R ≥ 3.4

Imports

dplyr
ggplot2
scales
pracma
ggpmisc
cowplot

Suggests

knitr
rmarkdown
testthat