CRAN/E | mlmm.gwas

mlmm.gwas

Pipeline for GWAS Using MLMM

Installation

About

Pipeline for Genome-Wide Association Study using Multi-Locus Mixed Model from Segura V, Vilhjálmsson BJ et al. (2012) doi:10.1038/ng.2314. The pipeline include detection of associated SNPs with MLMM, model selection by lowest eBIC and p-value threshold, estimation of the effects of the SNPs in the selected model and graphical functions.

Key Metrics

Version 1.0.6
R ≥ 3.3.0
Published 2019-08-05 1728 days ago
Needs compilation? no
License GPL-3
CRAN checks mlmm.gwas results

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Maintainer

Maintainer

Clement Mabire

clement.mabire@inra.fr

Authors

Fanny Bonnafous

aut

Alexandra Duhnen

aut

Louise Gody

aut

Olivier
Guillaume[aut

cre

Brigitte Mangin

aut

Prune Pegot-Espagnet

aut

Vincent Segura

aut

Bjarni J. Vilhjalmsson

aut

Clement Mabire

aut

Timothee Flutre

aut

Material

NEWS
Reference manual
Package source

Vignettes

GWAS pipeline manual

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

mlmm.gwas archive

Depends

R ≥ 3.3.0

Imports

multcompView ≥ 0.1-7
multcomp ≥ 1.4-8
coxme ≥ 2.2-5
sommer ≥ 3.2
Matrix ≥ 1.2-10

Suggests

knitr
rmarkdown