CRAN/E | microeco

microeco

Microbial Community Ecology Data Analysis

Installation

About

A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.

Citation microeco citation info
github.com/ChiLiubio/microeco

Key Metrics

Version 1.6.0
R ≥ 3.5.0
Published 2024-03-31 20 days ago
Needs compilation? no
License GPL-3
CRAN checks microeco results

Downloads

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Maintainer

Maintainer

Chi Liu

liuchi0426@126.com

Authors

Chi Liu

aut / cre

Felipe R. P. Mansoldo

ctb

Umer Zeeshan Ijaz

ctb

Chenhao Li

ctb

Yang Cao

ctb

Minjie Yao

ctb

Xiangzhen Li

ctb

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

microeco archive

Depends

R ≥ 3.5.0

Imports

R6
stats
ape
vegan
rlang
data.table
magrittr
dplyr
tibble
scales
grid
ggplot2 ≥ 3.5.0
RColorBrewer
reshape2
igraph

Suggests

GUniFrac
MASS
ggpubr
randomForest
ggdendro
ggrepel
agricolae
gridExtra
picante
pheatmap
rgexf
mice
GGally

Reverse Imports

file2meco
meconetcomp
mecoturn