CRAN/E | metaprotr

metaprotr

Metaproteomics Post-Processing Analysis

Installation

About

Set of tools for descriptive analysis of metaproteomics data generated from high-throughput mass spectrometry instruments. These tools allow to cluster peptides and proteins abundance, expressed as spectral counts, and to manipulate them in groups of metaproteins. This information can be represented using multiple visualization functions to portray the global metaproteome landscape and to differentiate samples or conditions, in terms of abundance of metaproteins, taxonomic levels and/or functional annotation. The provided tools allow to implement flexible analytical pipelines that can be easily applied to studies interested in metaproteomics analysis.

forgemia.inra.fr/pappso/metaprotr

Key Metrics

Version 1.2.2
R ≥ 3.5.0
Published 2021-02-05 1148 days ago
Needs compilation? no
License GPL-3
CRAN checks metaprotr results

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Maintainer

Maintainer

Aaron Millan-Oropeza

aaron.ibt@gmail.com

Authors

Aaron Millan-Oropeza

aut / cre

Catherine Juste

aut / ctb

Ariane Bassignani

aut / ctb

Céline Henry

aut / ctb

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 3.5.0

Imports

ade4
dendextend
dplyr
ggforce
ggrepel
reshape2
stringr
tidyverse