CRAN/E | markerpen

markerpen

Marker Gene Detection via Penalized Principal Component Analysis

Installation

About

Implementation of the 'MarkerPen' algorithm, short for marker gene detection via penalized principal component analysis, described in the paper by Qiu, Wang, Lei, and Roeder (2020, doi:10.1101/2020.11.07.373043). 'MarkerPen' is a semi-supervised algorithm for detecting marker genes by combining prior marker information with bulk transcriptome data.

System requirements C++11

Key Metrics

Version 0.1.1
R ≥ 3.5.0
Published 2021-03-17 1135 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks markerpen results

Downloads

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Maintainer

Maintainer

Yixuan Qiu

yixuan.qiu@cos.name

Authors

Yixuan Qiu
Jiebiao Wang
Jing Lei
Kathryn Roeder

Material

README
NEWS
Reference manual
Package source

Vignettes

MarkerPen: Marker Gene Detection via Penalized Principal Component Analysis

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

markerpen archive

Depends

R ≥ 3.5.0

Imports

Rcpp ≥ 1.0.1
RSpectra
stats

Suggests

knitr
rmarkdown
prettydoc
scales

LinkingTo

Rcpp
RcppEigen
RSpectra