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Mark-Recapture Analysis for Survival and Abundance Estimation

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Functions for fitting various models to capture-recapture data including mixed-effects Cormack-Jolly-Seber(CJS) and multistate models and the multi-variate state model structure for survival estimation and POPAN structured Jolly-Seber models for abundance estimation. There are also Hidden Markov model (HMM) implementations of CJS and multistate models with and without state uncertainty and a simulation capability for HMM models.

Citation marked citation info
System requirements ADMB version 11 <http://admb-project.org/> for use.admb=TRUE; see readme.txt

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Version 1.2.8
R ≥ 3.5.0
Published 2023-10-19 162 days ago
Needs compilation? yes
License GPL-2
License GPL-3
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Maintainer

Maintainer

Jeff Laake

jefflaake@gmail.com

Authors

Jeff Laake
Devin Johnson
Paul Conn
example for simHMM from Jay Rotella

Material

NEWS
Reference manual
Package source

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Windows

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x86_64

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Old Sources

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Depends

R ≥ 3.5.0
lme4
methods
parallel

Imports

graphics
stats
utils
R2admb
truncnorm
coda
Matrix
numDeriv
expm
Rcpp ≥ 0.9.13
TMB
optimx ≥ 2013.8.6
data.table
knitr
kableExtra
bookdown

Suggests

ggplot2

LinkingTo

Rcpp

Reverse Imports

RWildbook

Reverse Suggests

FSA