CRAN/E | manhattanly

manhattanly

Interactive Q-Q and Manhattan Plots Using 'plotly.js'

Installation

About

Create interactive manhattan, Q-Q and volcano plots that are usable from the R console, in 'Dash' apps, in the 'RStudio' viewer pane, in 'R Markdown' documents, and in 'Shiny' apps. Hover the mouse pointer over a point to show details or drag a rectangle to zoom. A manhattan plot is a popular graphical method for visualizing results from high-dimensional data analysis such as a (epi)genome wide association study (GWAS or EWAS), in which p-values, Z-scores, test statistics are plotted on a scatter plot against their genomic position. Manhattan plots are used for visualizing potential regions of interest in the genome that are associated with a phenotype. Interactive manhattan plots allow the inspection of specific value (e.g. rs number or gene name) by hovering the mouse over a cell, as well as zooming into a region of the genome (e.g. a chromosome) by dragging a rectangle around the relevant area. This work is based on the 'qqman' package and the 'plotly.js' engine. It produces similar manhattan and Q-Q plots as the 'manhattan' and 'qq' functions in the 'qqman' package, with the advantage of including extra annotation information and interactive web-based visualizations directly from R. Once uploaded to a 'plotly' account, 'plotly' graphs (and the data behind them) can be viewed and modified in a web browser.

github.com/sahirbhatnagar/manhattanly/
sahirbhatnagar.com/manhattanly/
Bug report File report

Key Metrics

Version 0.3.0
R ≥ 3.5.0
Published 2021-04-26 1067 days ago
Needs compilation? no
License MIT
License File
CRAN checks manhattanly results

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Maintainer

Maintainer

Sahir Bhatnagar

sahir.bhatnagar@gmail.com

Authors

Sahir Bhatnagar

aut / cre

(http://sahirbhatnagar.com/)

Material

README
NEWS
Reference manual
Package source

Vignettes

Interactive Manhattan, Q-Q, and Volcano Plots Using Plotly.js

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

manhattanly archive

Depends

R ≥ 3.5.0

Imports

stats
magrittr
plotly
ggplot2

Suggests

testthat ≥ 3.0.0
knitr
rmarkdown
covr

Reverse Imports

MetaIntegrator