CRAN/E | limorhyde

limorhyde

Differential Analysis of Rhythmic Transcriptome Data

Installation

About

A flexible approach, inspired by cosinor regression, for differential analysis of rhythmic transcriptome data. See Singer and Hughey (2018) doi:10.1177/0748730418813785.

limorhyde.hugheylab.org
github.com/hugheylab/limorhyde
Bug report File report

Key Metrics

Version 1.0.1
R ≥ 3.4
Published 2022-02-18 797 days ago
Needs compilation? no
License GPL-2
CRAN checks limorhyde results

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Maintainer

Maintainer

Jake Hughey

jakejhughey@gmail.com

Authors

Jake Hughey

aut / cre

Jordan Singer

ctb

Material

NEWS
Reference manual
Package source

Vignettes

Analyzing circadian transcriptome data with LimoRhyde

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 3.4

Imports

pbs ≥ 1.1

Suggests

annotate ≥ 1.58.0
data.table ≥ 1.12.2
foreach ≥1.4.4
ggplot2 ≥ 2.2.1
knitr ≥ 1.20
limma ≥ 3.36.1
matrixStats ≥ 0.56.0
org.Mm.eg.db ≥ 3.6.0
qs ≥0.25.2
rmarkdown ≥ 1.9
testthat ≥ 3.0.4