CRAN/E | kmer

kmer

Fast K-Mer Counting and Clustering for Biological Sequence Analysis

Installation

About

Contains tools for rapidly computing distance matrices and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning. See Vinga and Almeida (2003) doi:10.1093/bioinformatics/btg005 for a review of k-mer counting methods and applications for biological sequence analysis.

Citation kmer citation info
github.com/shaunpwilkinson/kmer
Bug report File report

Key Metrics

Version 1.1.2
Published 2019-05-20 1797 days ago
Needs compilation? yes
License GPL-3
CRAN checks kmer results

Downloads

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Maintainer

Maintainer

Shaun Wilkinson

shaunpwilkinson@gmail.com

Authors

Shaun Wilkinson

aut / cre

Material

README
Reference manual
Package source

Vignettes

Introduction to the kmer package

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

kmer archive

Imports

openssl
phylogram
Rcpp ≥ 0.12.13

Suggests

ape ≥ 4.0
dendextend
knitr
rmarkdown
testthat

LinkingTo

Rcpp

Reverse Imports

aphid
copyseparator
insect
packFinder

Reverse Suggests

Platypus