CRAN/E | jetset

jetset

One-to-One Gene-Probeset Mapping for Affymetrix Human Microarrays

Installation

About

On Affymetrix gene expression microarrays, a single gene may be measured by multiple probe sets. This can present a mild conundrum when attempting to evaluate a gene "signature" that is defined by gene names rather than by specific probe sets. This package provides a one-to-one mapping from gene to "best" probe set for four Affymetrix human gene expression microarrays: hgu95av2, hgu133a, hgu133plus2, and u133x3p. This package also includes the pre-calculated probe set quality scores that were used to define the mapping.

Citation jetset citation info
www.cbs.dtu.dk/biotools/jetset/

Key Metrics

Version 3.4.0
R ≥ 2.10
Published 2017-04-05 2587 days ago
Needs compilation? no
License Artistic-2.0
CRAN checks jetset results

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Maintainer

Maintainer

Aron Eklund

eklund@cbs.dtu.dk

Authors

Qiyuan Li
Aron Eklund

Material

README
NEWS
Reference manual
Package source

Vignettes

Using jetset

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

jetset archive

Depends

R ≥ 2.10

Imports

org.Hs.eg.db
AnnotationDbi

Reverse Imports

easyDifferentialGeneCoexpression
Patterns