CRAN/E | ioncopy

ioncopy

Calling Copy Number Alterations in Amplicon Sequencing Data

Installation

About

Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) doi:10.18632/oncotarget.7451.

Key Metrics

Version 2.2.2
Published 2020-08-11 1362 days ago
Needs compilation? no
License GPL-3
CRAN checks ioncopy results

Downloads

Yesterday 3 -63%
Last 7 days 55 -31%
Last 30 days 226 -9%
Last 90 days 648 -23%
Last 365 days 2.778 -14%

Maintainer

Maintainer

Jan Budczies

jan.budczies@med.uni-heidelberg.de

Authors

Jan Budczies
Eva Romanovsky

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

ioncopy archive

Imports

shiny
zip