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inlabru

Bayesian Latent Gaussian Modelling using INLA and Extensions

Installation

About

Facilitates spatial and general latent Gaussian modeling using integrated nested Laplace approximation via the INLA package (). Additionally, extends the GAM-like model class to more general nonlinear predictor expressions, and implements a log Gaussian Cox process likelihood for modeling univariate and spatial point processes based on ecological survey data. Model components are specified with general inputs and mapping methods to the latent variables, and the predictors are specified via general R expressions, with separate expressions for each observation likelihood model in multi-likelihood models. A prediction method based on fast Monte Carlo sampling allows posterior prediction of general expressions of the latent variables. Ecology-focused introduction in Bachl, Lindgren, Borchers, and Illian (2019) doi:10.1111/2041-210X.13168.

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www.inlabru.org
inlabru-org.github.io/inlabru/
github.com/inlabru-org/inlabru
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Key Metrics

Version 2.10.1
R ≥ 3.6
Published 2023-12-21 121 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks inlabru results

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Maintainer

Maintainer

Finn Lindgren

finn.lindgren@gmail.com

Authors

Finn Lindgren

aut / cre / cph

(Finn Lindgren continued development of the main code)

Fabian E. Bachl

aut / cph

(Fabian Bachl wrote the main code)

David L. Borchers

ctb / dtc / cph

(David Borchers wrote code for Gorilla data import and sampling, multiplot tool)

Daniel Simpson

ctb / cph

(Daniel Simpson wrote the basic LGCP sampling method)

Lindesay Scott-Howard

ctb / dtc / cph

(Lindesay Scott-Howard provided MRSea data import code)

Seaton Andy

ctb

(Andy Seaton provided testing, bugfixes, and vignettes)

Suen Man Ho

ctb / cph

(Man Ho Suen contributed features for aggregated responses and vignette updates)

Roudier Pierre

ctb / cph

(Pierre Roudier contributed general quantile summaries)

Meehan Tim

ctb / cph

(Tim Meehan contributed the SVC vignette and robins data)

Reddy Peddinenikalva Niharika

ctb / cph

(Niharika Peddinenikalva contributed the LGCP residuals vignette)

Perepolkin Dmytro

ctb / cph

(Dmytro Perepolkin contributed the ZIP/ZAP vignette)

Material

README
NEWS
Reference manual
Package source

In Views

MixedModels

Additional repos

inla.r-inla-download.org/R/testing

Vignettes

Articles list
Devel: Customised model components with the bru_mapper system
Defining model components
Nonlinear model approximation
Iterative linearised INLA method
Prediction scores

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

inlabru archive

Depends

fmesher ≥ 0.1.2
methods
R ≥ 3.6
stats

Imports

dplyr
lifecycle
magrittr
MatrixModels
Matrix
plyr
rlang
sf
sp ≥ 1.4-5
terra
tibble
utils
withr

Suggests

covr
ggmap
ggplot2
graphics
INLA ≥ 23.01.31
knitr
maps
mgcv
patchwork
raster
RColorBrewer
rgl
rmarkdown
scales
shiny
sn
spatstat.geom
spatstat.data
sphereplot
splancs
tidyterra
testthat
tidyr
DiagrammeR

Enhances

stars

Reverse Depends

PointedSDMs

Reverse Imports

bmstdr
intSDM

Reverse Suggests

fmesher
INLAspacetime
MetricGraph
rSPDE