CRAN/E | incidence

incidence

Compute, Handle, Plot and Model Incidence of Dated Events

Installation

About

Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON () toolkit for outbreak analysis.

Citation incidence citation info
www.repidemicsconsortium.org/incidence/
Bug report File report

Key Metrics

Version 1.7.3
Published 2020-11-04 1271 days ago
Needs compilation? no
License MIT
License File
CRAN checks incidence results

Downloads

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Maintainer

Maintainer

Tim Taylor

tim.taylor@hiddenelephants.co.uk

Authors

Thibaut Jombart

aut

Zhian N. Kamvar

aut

Rich FitzJohn

aut

Tim Taylor

cre

Jun Cai

ctb

Sangeeta Bhatia

ctb

Jakob Schumacher

ctb

Juliet R.C. Pulliam

ctb

Material

NEWS
Reference manual
Package source

In Views

Epidemiology

Vignettes

Conversions
Customise graphics
Incidence class
Incidence fit class
Overview

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

incidence archive

Imports

ggplot2 ≥ 3.3.2
aweek ≥ 0.2.0

Suggests

magrittr
outbreaks
testthat
vdiffr
covr
knitr
rmarkdown
scales
cowplot

Reverse Imports

EpiEstim
projections

Reverse Suggests

earlyR
epitrix
outbreaks