CRAN/E | ibdsim2

ibdsim2

Simulation of Chromosomal Regions Shared by Family Members

Installation

About

Simulation of segments shared identical-by-descent (IBD) by pedigree members. Using sex specific recombination rates along the human genome (Halldorsson et al. (2019) doi:10.1126/science.aau1043), phased chromosomes are simulated for all pedigree members. Applications include calculation of realised relatedness coefficients and IBD segment distributions. 'ibdsim2' is part of the 'ped suite' collection of packages for pedigree analysis. A detailed presentation of the 'ped suite', including a separate chapter on 'ibdsim2', is available in the book 'Pedigree analysis in R' (Vigeland, 2021, ISBN:9780128244302). A 'shiny' app for visualising and comparing IBD distributions is available at .

github.com/magnusdv/ibdsim2
magnusdv.github.io/pedsuite/
magnusdv.shinyapps.io/ibdsim2-shiny/

Key Metrics

Version 2.0.0
R ≥ 4.1.0
Published 2023-08-17 225 days ago
Needs compilation? yes
License GPL-3
CRAN checks ibdsim2 results
Language en-GB

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Maintainer

Maintainer

Magnus Dehli Vigeland

m.d.vigeland@medisin.uio.no

Authors

Magnus Dehli Vigeland

aut / cre

Material

README
NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

ibdsim2 archive

Depends

R ≥ 4.1.0
pedtools ≥ 2.2.0

Imports

Rcpp
ggplot2
glue
ribd ≥ 1.5.0

Suggests

testthat

LinkingTo

Rcpp

Reverse Imports

pedsuite

Reverse Suggests

forrel