CRAN/E | iNEXT.beta3D

iNEXT.beta3D

Interpolation and Extrapolation with Beta Diversity for Three Dimensions of Biodiversity

Installation

About

As a sequel to 'iNEXT', the 'iNEXT.beta3D' package provides functions to compute standardized taxonomic, phylogenetic, and functional diversity (3D) estimates with a common sample size (for alpha and gamma diversity) or sample coverage (for alpha, beta, gamma diversity as well as dissimilarity or turnover indices). Hill numbers and their generalizations are used to quantify 3D and to make multiplicative decomposition (gamma = alpha x beta). The package also features size- and coverage-based rarefaction and extrapolation sampling curves to facilitate rigorous comparison of beta diversity across datasets. See Chao et al. (2023) doi:10.1002/ecm.1588 for more details.

Citation iNEXT.beta3D citation info
sites.google.com/view/chao-lab-website/software/inext-beta3d
Bug report File report

Key Metrics

Version 1.0.2
R ≥ 4.0
Published 2024-04-17 20 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks iNEXT.beta3D results

Downloads

Yesterday 8 -60%
Last 7 days 62 -43%
Last 30 days 368 +6%
Last 90 days 871
Last 365 days 871

Maintainer

Maintainer

Anne Chao

chao@stat.nthu.edu.tw

Authors

Anne Chao

aut / cre

KaiHsiang Hu

ctb

Material

NEWS
Reference manual
Package source

Vignettes

iNEXT.beta3D Vignette (Feb. 2024)

macOS

r-prerel

arm64

r-release

arm64

r-oldrel

arm64

r-prerel

x86_64

r-release

x86_64

Windows

r-prerel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

iNEXT.beta3D archive

Depends

R ≥ 4.0

Imports

stats
magrittr
ggplot2
abind
iNEXT.3D
future.apply
tibble
dplyr
tidytree
tidyr
phyclust
ape

Suggests

testthat
knitr
rmarkdown
ggthemes