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High-Dimensional Undirected Graph Estimation

Installation

About

Provides a general framework for high-dimensional undirected graph estimation. It integrates data preprocessing, neighborhood screening, graph estimation, and model selection techniques into a pipeline. In preprocessing stage, the nonparanormal(npn) transformation is applied to help relax the normality assumption. In the graph estimation stage, the graph structure is estimated by Meinshausen-Buhlmann graph estimation or the graphical lasso, and both methods can be further accelerated by the lossy screening rule preselecting the neighborhood of each variable by correlation thresholding. We target on high-dimensional data analysis usually d >> n, and the computation is memory-optimized using the sparse matrix output. We also provide a computationally efficient approach, correlation thresholding graph estimation. Three regularization/thresholding parameter selection methods are included in this package: (1)stability approach for regularization selection (2) rotation information criterion (3) extended Bayesian information criterion which is only available for the graphical lasso.

Key Metrics

Version 1.3.5
R ≥ 3.0.0
Published 2021-06-30 1024 days ago
Needs compilation? yes
License GPL-2
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Maintainer

Maintainer

Haoming Jiang

jianghm.ustc@gmail.com

Authors

Haoming Jiang
Xinyu Fei
Han Liu
Kathryn Roeder
John Lafferty
Larry Wasserman
Xingguo Li
Tuo Zhao

Material

Reference manual
Package source

In Views

GraphicalModels

Vignettes

vignette

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

huge archive

Depends

R ≥ 3.0.0

Imports

Matrix
igraph
MASS
grDevices
graphics
methods
stats
utils
Rcpp

LinkingTo

Rcpp
RcppEigen

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