CRAN/E | hoardeR

hoardeR

Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices

Installation

About

Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the targetscan.org API.

Key Metrics

Version 0.10
R ≥ 3.2
Published 2024-04-08 17 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks hoardeR results

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Maintainer

Maintainer

Daniel Fischer

daniel.fischer@luke.fi

Authors

Daniel Fischer

aut / cre

Anu Sironen

aut

Material

README
ChangeLog
Reference manual
Package source

Vignettes

An Introduction to hoardeR

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

hoardeR archive

Depends

R ≥ 3.2

Imports

bamsignals ≥ 1.10.0
Biostrings ≥ 2.46.0
data.table ≥1.11.4
GenomicRanges ≥ 1.30.3
GenomicTools.fileHandler ≥ 0.1.4
httr ≥ 1.3.1
IRanges ≥ 2.12.0
KernSmooth ≥ 2.23-15
knitr ≥ 1.20
MASS ≥ 7.3-31
R.utils ≥2.6.0
RCurl ≥ 1.95
rmarkdown ≥ 1.10
Rsamtools ≥1.30.0
S4Vectors ≥ 0.16.0
seqinr ≥ 1.0-2
stringr ≥1.3.1
XML ≥ 3.98-1.1