CRAN/E | hierfstat

hierfstat

Estimation and Tests of Hierarchical F-Statistics

Installation

About

Estimates hierarchical F-statistics from haploid or diploid genetic data with any numbers of levels in the hierarchy, following the algorithm of Yang (Evolution(1998), 52:950). Tests via randomisations the significance of each F and variance components, using the likelihood-ratio statistics G (Goudet et al. (1996) ). Estimates genetic diversity statistics for haploid and diploid genetic datasets in various formats, including inbreeding and coancestry coefficients, and population specific F-statistics following Weir and Goudet (2017) .

www.r-project.org
github.com/jgx65/hierfstat
Bug report File report

Key Metrics

Version 0.5-11
R ≥ 2.10
Published 2022-05-05 721 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks hierfstat results

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Maintainer

Maintainer

Jerome Goudet

jerome.goudet@unil.ch

Authors

Jerome Goudet

aut / cre

Thibaut Jombart

aut

Zhian N. Kamvar

ctb

Eric Archer

ctb

Olivier Hardy

ctb

Material

Reference manual
Package source

Vignettes

Hierfstat latest features
Importing data in Hierfstat

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

hierfstat archive

Depends

R ≥ 2.10

Imports

ade4
adegenet
gaston
gtools
methods

Suggests

ape
pegas
knitr
rmarkdown
testthat

Reverse Imports

GenomeAdmixR
HierDpart

Reverse Suggests

adegenet
dartR