CRAN/E | hahmmr

hahmmr

Haplotype-Aware Hidden Markov Model for RNA

Installation

About

Haplotype-aware Hidden Markov Model for RNA (HaHMMR) is a method for detecting copy number variations (CNVs) from bulk RNA-seq data. Additional examples, documentations, and details on the method are available at .

Key Metrics

Version 1.0.0
R ≥ 4.1.0
Published 2023-10-25 187 days ago
Needs compilation? yes
License MIT
License File
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Maintainer

Maintainer

Teng Gao

tgaoteng@gmail.com

Authors

Teng Gao

aut / cre

Evan Biederstedt

aut

Peter Kharchenko

aut

Material

README
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 4.1.0

Imports

data.table
dplyr
GenomicRanges
ggplot2
glue
IRanges
methods
patchwork
Rcpp
stringr
tibble
zoo

Suggests

ggrastr
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LinkingTo

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