CRAN/E | hagis

hagis

Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity

Installation

About

Analysis of plant pathogen pathotype survey data. Functions provided calculate distribution of susceptibilities, distribution of complexities with statistics, pathotype frequency distribution, as well as diversity indices for pathotypes. This package is meant to be a direct replacement for Herrmann, Löwer and Schachtel's (1999) doi:10.1046/j.1365-3059.1999.00325.x Habgood-Gilmour Spreadsheet, 'HaGiS', previously used for pathotype analysis.

Citation hagis citation info
github.com/openplantpathology/hagis
openplantpathology.github.io/hagis/
Bug report File report

Key Metrics

Version 3.1.11
R ≥ 3.4.0
Published 2023-09-06 205 days ago
Needs compilation? no
License MIT
License File
CRAN checks hagis results
Language en-US

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Maintainer

Maintainer

Adam H. Sparks

adamhsparks@gmail.com

Authors

Austin G. McCoy

aut / ccp

Zachary Noel

aut / ccp

Adam H. Sparks

aut / cre

Martin Chilvers

aut / ths

Zhian N. Kamvar

ctb / rev

Michigan Soybean Promotion Committee

fnd

Project GREEEN

fnd

North Central Soybean Research Program

fnd

GRDC Project DAQ00186

fnd

Material

README
NEWS
Reference manual
Package source

In Views

Agriculture

Vignettes

Beta-diversity Analysis with hagis
hagis: Tools for Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

hagis archive

Depends

R ≥ 3.4.0

Imports

data.table
ggplot2
pander
stats
utils

Suggests

ape
dplyr
knitr
rmarkdown
testthat
vegan
vdiffr
roxyglobals