CRAN/E | groupedSurv

groupedSurv

Efficient Estimation of Grouped Survival Models Using the Exact Likelihood Function

Installation

About

These 'Rcpp'-based functions compute the efficient score statistics for grouped time-to-event data (Prentice and Gloeckler, 1978), with the optional inclusion of baseline covariates. Functions for estimating the parameter of interest and nuisance parameters, including baseline hazards, using maximum likelihood are also provided. A parallel set of functions allow for the incorporation of family structure of related individuals (e.g., trios). Note that the current implementation of the frailty model (Ripatti and Palmgren, 2000) is sensitive to departures from model assumptions, and should be considered experimental. For these data, the exact proportional-hazards-model-based likelihood is computed by evaluating multiple variable integration. The integration is accomplished using the 'Cuba' library (Hahn, 2005), and the source files are included in this package. The maximization process is carried out using Brent's algorithm, with the C++ code file from John Burkardt and John Denker (Brent, 2002).

Citation groupedSurv citation info

Key Metrics

Version 1.0.5.1
Published 2023-09-28 219 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks groupedSurv results

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Maintainer

Maintainer

Alexander Sibley

dcibioinformatics@duke.edu

Authors

Jiaxing Lin

aut

Alexander Sibley

aut

Tracy Truong

aut

Kouros Owzar

aut

Zhiguo Li

aut

Layne Rogers

ctb

Yu Jiang

ctb

Janice McCarthy

ctb

Andrew Allen

ctb

Material

NEWS
Reference manual
Package source

Vignettes

groupedSurv

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

groupedSurv archive

Imports

Rcpp ≥ 0.12.4
doParallel
parallel
foreach
qvalue

Suggests

knitr
snplist
BEDMatrix

LinkingTo

Rcpp
RcppEigen
BH