CRAN/E | gkmSVM

gkmSVM

Gapped-Kmer Support Vector Machine

Installation

About

Imports the 'gkmSVM' v2.0 functionalities into R It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms. Users should note that the suggested packages 'rtracklayer', 'GenomicRanges', 'BSgenome', 'BiocGenerics', 'Biostrings', 'GenomeInfoDb', 'IRanges', and 'S4Vectors' are all BioConductor packages .

Key Metrics

Version 0.83.0
Published 2023-08-20 252 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks gkmSVM results

Downloads

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Last 30 days 285 -16%
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Last 365 days 3.977 +1%

Maintainer

Maintainer

Mike Beer

mbeer@jhu.edu

Authors

Mahmoud Ghandi

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

gkmSVM archive

Imports

kernlab
seqinr
utils
ROCR
Rcpp
grDevices
graphics
stats

Suggests

rtracklayer
GenomicRanges
BSgenome
BSgenome.Hsapiens.UCSC.hg18.masked
BSgenome.Hsapiens.UCSC.hg19.masked
BiocGenerics
Biostrings
GenomeInfoDb
IRanges
S4Vectors

LinkingTo

Rcpp