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Graphical Independence Filtering

Installation

About

Provides a method of recovering the precision matrix for Gaussian graphical models efficiently. Our approach could be divided into three categories. First of all, we use Hard Graphical Thresholding for best subset selection problem of Gaussian graphical model, and the core concept of this method was proposed by Luo et al. (2014) . Secondly, a closed form solution for graphical lasso under acyclic graph structure is implemented in our package (Fattahi and Sojoudi (2019) ). Furthermore, we implement block coordinate descent algorithm to efficiently solve the covariance selection problem (Dempster (1972) doi:10.2307/2528966). Our package is computationally efficient and can solve ultra-high-dimensional problems, e.g. p > 10,000, in a few minutes.

Key Metrics

Version 0.1.1
R ≥ 3.2
Published 2024-01-12 113 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks gif results

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Maintainer

Maintainer

Shiyun Lin

linshy27@mail2.sysu.edu.cn

Authors

Shiyun Lin

aut / cre

Jin Zhu

aut

Junxian Zhu

aut

Xueqin Wang

aut

SC2S2

cph

Material

README
NEWS
Reference manual
Package source

Vignettes

gif: Graphical Independence Filtering for Learning Large-Scale Sparse Graphical Models

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

gif archive

Depends

R ≥ 3.2

Imports

Rcpp ≥ 0.12.15
MASS
Matrix

Suggests

testthat
knitr
rmarkdown

LinkingTo

Rcpp
RcppEigen