CRAN/E | ggpicrust2

ggpicrust2

Make 'PICRUSt2' Output Analysis and Visualization Easier

Installation

About

Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) doi:10.1093/bioinformatics/btad470.

github.com/cafferychen777/ggpicrust2
Bug report File report

Key Metrics

Version 1.7.2
R ≥ 3.5.0
Published 2023-08-13 264 days ago
Needs compilation? no
License MIT
License File
CRAN checks ggpicrust2 results

Downloads

Yesterday 41 0%
Last 7 days 138 -33%
Last 30 days 760 -22%
Last 90 days 2.476 -10%
Last 365 days 9.822 +872%

Maintainer

Maintainer

Chen Yang

cafferychen7850@gmail.com

Authors

Chen Yang

aut / cre

Liangliang Zhang

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

ggpicrust2 vigenett

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

ggpicrust2 archive

Depends

R ≥ 3.5.0

Imports

ALDEx2
aplot
DESeq2
dplyr
edgeR
GGally
ggplot2
grid
ggh4x
lefser
limma
Maaslin2
metagenomeSeq
MicrobiomeStat
readr
stats
SummarizedExperiment
tibble
tidyr
ggprism
patchwork
circlize

Suggests

covr
testthat ≥ 3.0.0
cowplot
Biobase
devtools
KEGGREST
ComplexHeatmap
ggforce
ggplotify
BiocGenerics
BiocManager
magrittr
utils
knitr
rmarkdown