CRAN/E | genio

genio

Genetics Input/Output Functions

Installation

About

Implements readers and writers for file formats associated with genetics data. Reading and writing Plink BED/BIM/FAM and GCTA binary GRM formats is fully supported, including a lightning-fast BED reader and writer implementations. Other functions are 'readr' wrappers that are more constrained, user-friendly, and efficient for these particular applications; handles Plink and Eigenstrat tables (FAM, BIM, IND, and SNP files). There are also make functions for FAM and BIM tables with default values to go with simulated genotype data.

github.com/OchoaLab/genio
Bug report File report

Key Metrics

Version 1.1.2
Published 2023-01-06 481 days ago
Needs compilation? yes
License GPL-3
CRAN checks genio results

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Maintainer

Maintainer

Alejandro Ochoa

alejandro.ochoa@duke.edu

Authors

Alejandro Ochoa

aut / cre

Material

README
NEWS
Reference manual
Package source

Vignettes

Read and write BED files with 'genio'

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

genio archive

Imports

readr ≥ 2.0.0
tibble
dplyr
Rcpp

Suggests

testthat
knitr
rmarkdown
BEDMatrix
snpStats
lobstr

LinkingTo

Rcpp