CRAN/E | gen3sis

gen3sis

General Engine for Eco-Evolutionary Simulations

Installation

About

Contains an engine for spatially-explicit eco-evolutionary mechanistic models with a modular implementation and several support functions. It allows exploring the consequences of ecological and macroevolutionary processes across realistic or theoretical spatio-temporal landscapes on biodiversity patterns as a general term. Reference: Oskar Hagen, Benjamin Flueck, Fabian Fopp, Juliano S. Cabral, Florian Hartig, Mikael Pontarp, Thiago F. Rangel, Loic Pellissier (2021) "gen3sis: A general engine for eco-evolutionary simulations of the processes that shape Earth's biodiversity" doi:10.1371/journal.pbio.3001340.

github.com/project-Gen3sis/R-package
System requirements C++11
Bug report File report

Key Metrics

Version 1.4
R ≥ 3.5.0
Published 2021-10-27 905 days ago
Needs compilation? yes
License GPL-3
CRAN checks gen3sis results

Downloads

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Maintainer

Maintainer

Oskar Hagen

oskar@hagen.bio

Authors

ETH Zürich

cph

Oskar Hagen

aut / cre

(Landscape Ecology, WSL and ETH Zürich, Switzerland)

Benjamin Flueck

aut

(Landscape Ecology, WSL and ETH Zürich, Switzerland)

Fabian Fopp

aut

(Landscape Ecology, WSL and ETH Zürich, Switzerland)

Juliano S. Cabral

aut

(Ecosystem Modeling, Center for Computational and Theoretical Biology, University of Würzburg, Würzburg, Germany)

Florian Hartig

aut

(Theoretical Ecology, University of Regensburg, Regensburg, Germany)

Mikael Pontarp

aut

(Department of Biology, Lund University, Lund, Sweden)

Charles Novaes de Santana

ctb

(Landscape Ecology, WSL and ETH Zürich, Switzerland)

Thiago F. Rangel

aut

(Department of Ecology, Universidade Federal de Goiás, Goiás, Brazil)

Theo Gaboriau

ctb

(Depatment of Computational Biology, Lausanne University, Switzerland)

Loïc Pellissier

aut / ths

(Landscape Ecology, WSL and ETH Zürich, Switzerland)

Material

README
Reference manual
Package source

Vignettes

3. Creating configurations (gen3sis input)
2. Creating landscapes (gen3sis input)
4. Example designing landscapes
1. Introducing gen3sis

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

gen3sis archive

Depends

R ≥ 3.5.0

Imports

Rcpp ≥ 0.12.16
Matrix
methods
utils
raster
gdistance
sp
stringr
tools
grDevices

Suggests

knitr
markdown
testthat ≥ 2.1.0
rmarkdown
formatR

LinkingTo

Rcpp
BH