CRAN/E | gbifdb

gbifdb

High Performance Interface to 'GBIF'

Installation

About

A high performance interface to the Global Biodiversity Information Facility, 'GBIF'. In contrast to 'rgbif', which can access small subsets of 'GBIF' data through web-based queries to a central server, 'gbifdb' provides enhanced performance for R users performing large-scale analyses on servers and cloud computing providers, providing full support for arbitrary 'SQL' or 'dplyr' operations on the complete 'GBIF' data tables (now over 1 billion records, and over a terabyte in size). 'gbifdb' accesses a copy of the 'GBIF' data in 'parquet' format, which is already readily available in commercial computing clouds such as the Amazon Open Data portal and the Microsoft Planetary Computer, or can be accessed directly without downloading, or downloaded to any server with suitable bandwidth and storage space. The high-performance techniques for local and remote access are described in and respectively.

docs.ropensci.org/gbifdb/
github.com/ropensci/gbifdb
Bug report File report

Key Metrics

Version 1.0.0
R ≥ 4.0
Published 2023-10-19 192 days ago
Needs compilation? no
License Apache License (≥ 2)
CRAN checks gbifdb results
Language en-US

Downloads

Yesterday 12 0%
Last 7 days 52 -9%
Last 30 days 214 -3%
Last 90 days 624 -30%
Last 365 days 2.556 +23%

Maintainer

Maintainer

Carl Boettiger

cboettig@gmail.com

Authors

Carl Boettiger

aut / cre

Material

README
NEWS
Reference manual
Package source

Vignettes

Intro to gbifdb

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

gbifdb archive

Depends

R ≥ 4.0

Imports

arrow ≥ 8.0.0
dplyr
duckdbfs

Suggests

spelling
dbplyr
testthat ≥ 3.0.0
covr
knitr
rmarkdown
minioclient