CRAN/E | funkycells

funkycells

Functional Data Analysis for Multiplexed Cell Images

Installation

About

Compare variables of interest between (potentially large numbers of) spatial interactions and meta-variables. Spatial variables are summarized using K, or other, functions, and projected for use in a modified random forest model. The model allows comparison of functional and non-functional variables to each other and to noise, giving statistical significance to the results. Included are preparation, modeling, and interpreting tools along with example datasets, as described in VanderDoes et al., (2023) doi:10.1101/2023.07.18.549619.

Citation funkycells citation info
github.com/jrvanderdoes/funkycells
jrvanderdoes.github.io/funkycells/
Bug report File report

Key Metrics

Version 1.1.1
R ≥ 2.10
Published 2023-08-09 268 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks funkycells results

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Maintainer

Maintainer

Jeremy VanderDoes

jeremy.vanderdoes@gmail.com

Authors

Jeremy VanderDoes

aut / cre / cph

Jack Hywood

aut

Gregory Rice

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

TNBC
funkycells
lungcancer
model_power_curves
model_walkthrough

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 2.10

Imports

fda
ggplot2
rpart
spatstat.explore
spatstat.geom
stats
stringr
tidyr

Suggests

knitr
pROC
rmarkdown
scales
testthat ≥ 3.0.0