CRAN/E | fst4pg

fst4pg

Genetic Distance Segmentation for Population Genetics

Installation

About

Provides efficient methods to compute local and genome wide genetic distances (corresponding to the so called Hudson Fst parameters) through moment method, perform chromosome segmentation into homogeneous Fst genomic regions, and selection sweep detection for multi-population comparison. When multiple profile segmentation is required, the procedure can be parallelized using the future package.

Key Metrics

Version 1.0.0
R ≥ 2.10
Published 2022-07-03 662 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks fst4pg results

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Maintainer

Maintainer

Tristan Mary-Huard

tristan.mary-huard@agroparistech.fr

Authors

Tristan Mary-Huard

aut / cre

Guillem Rigaill

aut

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 2.10

Imports

dplyr
fpopw
furrr
future
ggplot2
gplots
graphics
grDevices
purrr
rlang
scales
stats
stringr
tibble
tidyr
utils